PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AHYPO_006674-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Amaranthaceae; Amaranthus
Family AP2
Protein Properties Length: 325aa    MW: 37308.3 Da    PI: 9.0798
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AHYPO_006674-RAgenomeBYUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2391.9e-1252114155
              AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng....kr...krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++gr++A+++d   +n     k      ++lg +  ++ Aa+a++ a++k++g
  AHYPO_006674-RA  52 SKYRGVTRHRWTGRYEAHLWDkDAWNDtqkkKGrqvYLIWLGAYHDEDAAARAYDLAALKYWG 114
                      89*******************655555676522457889*******99*************98 PP

2AP249.31.2e-15157208155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV +++ +grW+A+I  +     +k+ +lg+f t eeAa+a++ a+ + +g
  AHYPO_006674-RA 157 SKYRGVARHHHNGRWEARIGRVLG---NKYLYLGTFATQEEAAAAYDIAAIQHRG 208
                      89****99**********988422...5**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-952114IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-1352124IPR016177DNA-binding domain
SMARTSM003807.5E-2053128IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-1353123IPR001471AP2/ERF domain
PROSITE profilePS5103218.72953122IPR001471AP2/ERF domain
PRINTSPR003674.7E-65465IPR001471AP2/ERF domain
PfamPF008473.8E-10157206IPR001471AP2/ERF domain
CDDcd000182.69E-14157218No hitNo description
SuperFamilySSF541711.96E-17157218IPR016177DNA-binding domain
SMARTSM003802.9E-27158222IPR001471AP2/ERF domain
PROSITE profilePS5103217.728158216IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18158217IPR001471AP2/ERF domain
PRINTSPR003674.7E-6198218IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAKAPNKKQK SKLHINKETS TSTHNLNKNS NPKAIKRTRK SLPRDSPFQR SSKYRGVTRH  60
RWTGRYEAHL WDKDAWNDTQ KKKGRQVYLI WLGAYHDEDA AARAYDLAAL KYWGGETLLN  120
FSLSTYDNEM KEMEGLTREE YIGSLRRKSN GFSRGVSKYR GVARHHHNGR WEARIGRVLG  180
NKYLYLGTFA TQEEAAAAYD IAAIQHRGQN AVTNFDVSRY MNLLDNSNKS CNAKSDQTSP  240
ENVAMPTMEH TQSFVDDEFM WGPQLPTPYC SSNLFDFNEY NNNSLLQYTF LDNNNNDVNI  300
GNNQQYSFSD ITSLLCDFDG MEDN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010687653.11e-124PREDICTED: AP2-like ethylene-responsive transcription factor At1g79700
SwissprotQ94AN48e-89AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0K9QHQ51e-141A0A0K9QHQ5_SPIOL; Uncharacterized protein
STRINGOB09G17420.11e-107(Oryza brachyantha)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79700.21e-88AP2 family protein